Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009946.1 Corchorus capsularis cultivar CVL-1 contig09967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55569

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10528--10582
18
3.1
18
94
0
92
41
1
36
20
1.63
11324--11481
78
2.0
78
97
0
298
27
18
25
29
1.98
16964--17017
3
18.0
3
100
0
108
66
0
0
33
0.92
26394--26460
31
2.2
31
84
10
84
38
20
10
29
1.86
27198--27248
26
2.0
26
100
0
102
39
21
3
35
1.72
29272--30150
437
2.0
438
83
5
1114
28
13
15
42
1.85
38102--38139
20
1.9
20
94
0
67
78
2
15
2
0.97
50433--50472
21
2.0
21
85
9
57
22
7
0
70
1.12
50534--50568
17
2.0
18
94
5
63
34
0
8
57
1.29
50771--53643
331
8.5
330
78
10
2510
36
17
14
32
1.90
51745--53643
664
2.9
662
86
4
2582
35
17
14
32
1.90
53134--54223
572
1.9
569
86
3
1405
36
17
14
32
1.90
53644--55569
666
2.9
661
89
2
2880
37
16
14
32
1.88
53636--55569
330
5.8
333
84
4
2513
37
16
14
32
1.88

Tables:   1

The End!