Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009947.1 Corchorus capsularis cultivar CVL-1 contig09968, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124147

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--6898
334
20.7
336
78
8
5985
36
16
14
32
1.89
8568--8602
13
2.5
14
90
9
54
71
2
0
25
1.00
11770--11802
16
2.1
16
94
0
57
39
3
0
57
1.14
11923--11965
21
2.0
21
95
0
77
44
4
11
39
1.62
19253--19287
2
17.0
2
94
5
61
48
0
2
48
1.16
21961--21989
14
2.1
14
100
0
58
58
0
41
0
0.98
22850--22878
13
2.1
14
93
6
51
68
0
0
31
0.89
22846--22878
17
1.9
17
93
0
57
66
0
0
33
0.92
31947--32023
37
2.1
38
95
2
138
23
28
18
29
1.97
33450--33479
14
2.1
14
100
0
60
50
0
6
43
1.28
38490--38531
21
2.0
21
90
9
68
52
2
14
30
1.54
38802--38845
21
2.2
20
83
4
52
56
4
6
31
1.46
39525--40168
343
1.9
331
83
7
812
39
13
9
38
1.76
40687--40735
3
16.3
3
95
0
89
30
2
0
67
1.02
41014--41059
21
2.2
21
96
0
83
36
10
17
34
1.85
44547--44574
11
2.5
11
100
0
56
39
7
25
28
1.82
65065--65573
160
3.3
152
84
9
625
38
12
12
37
1.81
71330--71361
2
16.0
2
100
0
64
50
0
0
50
1.00
78372--78424
26
2.0
26
100
0
106
33
22
11
32
1.90
89990--90026
18
2.0
19
89
5
58
29
0
43
27
1.55
90027--90067
21
2.0
21
85
0
55
29
4
43
21
1.73
92653--92759
33
3.3
33
75
13
87
15
32
36
14
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92856--92920
33
2.0
33
84
6
87
13
32
40
13
1.85
99061--99093
2
16.5
2
100
0
66
48
0
0
51
1.00
101470--101551
29
2.7
30
84
5
112
37
9
23
29
1.87
102340--102383
22
2.0
22
100
0
88
18
9
9
63
1.49
105109--105144
17
2.1
18
89
5
56
58
8
11
22
1.59
106172--106214
21
2.0
21
95
0
77
32
25
11
30
1.91
116170--116216
3
16.0
3
95
4
87
65
0
0
34
0.93

Tables:   1

The End!