Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009954.1 Corchorus capsularis cultivar CVL-1 contig09975, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11724
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:9136 original size:17 final size:17

Alignment explanation


    Indices: 9090--9129  Score: 71
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       9080 CTAGATTACT

                             
       9090 AGTGATGCAAGATCACC
          1 AGTGATGCAAGATCACC

                             
       9107 AGTGATGCAAGATCACC
          1 AGTGATGCAAGATCACC

            *     
       9124 GGTGAT
          1 AGTGAT

       9130 CAAAGATTAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.33, C:0.20, G:0.28, T:0.20


Consensus pattern (17 bp):   
AGTGATGCAAGATCACC
Done.