Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009955.1 Corchorus capsularis cultivar CVL-1 contig09976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27162

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8878--8941
21
3.0
21
81
4
76
31
9
18
40
1.83
9904--9957
27
2.0
27
100
0
108
44
11
11
33
1.75
20252--20331
38
2.1
37
90
2
124
12
16
12
58
1.63
20870--21050
22
8.3
22
71
8
127
37
8
16
37
1.80
20870--20999
66
2.0
66
81
6
156
38
10
14
36
1.81
21086--21199
22
5.2
21
73
12
77
33
7
20
38
1.81
21235--21404
22
7.7
23
74
13
117
39
11
15
34
1.83
21323--21444
44
2.8
44
76
5
102
40
10
14
33
1.81
21298--21442
22
6.6
22
74
5
89
40
10
14
35
1.80
21542--21579
19
2.0
20
94
5
69
42
7
23
26
1.81
21591--21842
22
11.5
22
69
11
119
40
9
15
34
1.79
21736--21815
23
3.5
23
79
1
90
38
10
15
36
1.80
21713--21818
45
2.4
44
79
4
113
39
10
15
34
1.81
21793--21842
25
2.0
25
84
0
64
34
16
14
36
1.88
21900--21950
22
2.3
23
82
3
59
33
13
15
37
1.87
22306--22401
46
2.1
46
88
3
140
27
33
13
26
1.93
26809--26863
25
2.2
25
86
0
74
38
7
7
47
1.59

Tables:   1

The End!