Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009959.1 Corchorus capsularis cultivar CVL-1 contig09980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50739

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--173
49
2.0
49
97
0
187
55
21
0
23
1.44
506--544
9
4.3
9
84
9
53
87
2
10
0
0.65
20479--20550
32
2.3
32
83
6
87
33
23
8
34
1.85
22351--22377
6
4.5
6
100
0
54
33
18
0
48
1.49
23718--23761
21
2.1
21
83
8
54
52
11
6
29
1.63
29673--29739
33
2.0
33
97
0
125
37
2
23
35
1.71
35115--35140
2
13.0
2
100
0
52
50
0
0
50
1.00
36374--36406
10
3.4
10
87
4
50
0
9
0
90
0.44
44249--44283
2
17.5
2
100
0
70
51
0
48
0
1.00
49751--49780
12
2.4
13
94
5
53
36
6
46
10
1.64
50462--50486
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!