Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009966.1 Corchorus capsularis cultivar CVL-1 contig09987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21461

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
704--731
3
9.3
3
100
0
56
67
0
0
32
0.91
3604--3659
3
18.3
3
92
3
94
64
0
1
33
1.04
5117--5155
2
19.5
2
100
0
78
48
0
0
51
1.00
6550--6792
84
2.8
84
82
10
287
38
15
13
32
1.86
7895--8186
96
3.0
96
87
2
424
26
13
21
38
1.90
8687--8746
2
34.0
2
72
24
55
45
1
0
53
1.10
8685--8739
12
4.9
12
74
17
64
43
1
0
54
1.10
8682--8770
26
3.6
25
76
19
89
47
1
0
51
1.08
8684--8767
32
2.7
30
77
15
91
46
1
0
52
1.08
16375--16460
45
1.9
45
85
0
118
23
26
19
30
1.98
16978--17193
33
6.5
34
94
2
368
30
6
26
36
1.82
16978--17193
67
3.2
67
95
2
382
30
6
26
36
1.82
17391--17437
22
2.1
22
100
0
94
17
14
27
40
1.89
18354--21456
333
9.4
332
84
3
3708
37
14
13
34
1.86
18354--21456
665
4.7
661
84
5
3814
37
14
13
34
1.86

Tables:   1

The End!