Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009972.1 Corchorus capsularis cultivar CVL-1 contig09993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68522

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7361--7397
12
3.1
12
88
0
56
10
18
32
37
1.86
23457--23844
160
2.4
160
98
0
740
39
18
12
29
1.88
33839--33909
30
2.4
29
84
13
99
43
15
19
21
1.87
35360--35438
40
2.1
38
90
9
126
26
2
21
49
1.62
38749--38779
2
15.5
2
100
0
62
51
0
0
48
1.00
40875--40921
3
15.0
3
79
16
51
61
0
36
2
1.08
41734--41826
45
2.1
45
87
0
132
43
5
17
34
1.72
43540--43567
2
14.0
2
100
0
56
50
0
0
50
1.00
44422--44537
31
3.8
30
72
13
92
37
23
20
18
1.94
44498--44583
30
2.8
31
83
3
129
32
22
23
22
1.98
49479--49503
2
12.5
2
100
0
50
52
0
0
48
1.00
49874--49905
11
2.9
11
90
0
55
81
15
3
0
0.82
54248--54425
38
4.7
38
92
0
257
24
17
33
23
1.96
54424--54460
6
6.2
6
87
0
56
18
2
32
45
1.64
55658--55770
55
2.1
55
93
0
190
35
13
13
38
1.83
64070--64102
16
1.9
18
88
11
52
42
6
6
45
1.53
64569--64629
32
1.9
31
90
9
97
29
16
3
50
1.61
64569--64636
32
2.1
32
86
10
95
30
14
4
50
1.63
64731--64809
38
2.2
35
88
6
113
13
16
11
58
1.64
65123--65188
22
3.0
22
75
2
62
39
4
16
39
1.69
65228--65294
25
2.8
25
78
12
63
41
10
11
35
1.76
65225--65463
22
10.9
22
70
10
123
41
10
13
34
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65255--65436
66
2.8
65
76
11
158
41
9
13
35
1.78
65548--65595
19
2.5
20
89
6
80
45
10
18
25
1.81
65583--65980
44
9.3
43
72
12
162
42
9
13
35
1.76
65754--65852
45
2.2
44
87
1
135
44
8
13
34
1.73
65583--65747
22
7.5
22
68
9
86
44
9
12
33
1.74
65672--65958
105
2.7
105
92
1
450
43
9
13
34
1.76
65859--65962
23
4.6
22
77
8
93
42
9
11
36
1.74
65859--65936
23
3.4
23
85
1
104
44
6
11
37
1.66
65859--65962
45
2.3
45
81
6
122
42
9
11
36
1.74
65925--65980
22
2.5
22
85
5
78
35
12
10
41
1.78
66641--66687
23
2.0
23
83
0
58
53
6
4
36
1.46
67837--68017
90
2.0
90
98
0
353
36
12
14
35
1.85

Tables:   1

The End!