genome.fa.s9974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009974.1 Corchorus capsularis cultivar CVL-1 contig09995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107271

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240--1318	36	2.2	36	90	4	124	27	39	15	17	1.90
1550--1579	6	5.0	6	91	0	51	20	0	13	66	1.24
1550--1586	12	3.1	12	88	0	56	24	0	13	62	1.31
7395--7478	32	2.7	31	80	7	89	38	22	17	21	1.94
7790--7835	18	2.6	18	92	0	74	23	17	6	52	1.68
17663--17692	14	2.1	14	100	0	60	40	23	0	36	1.55
20128--20159	3	10.7	3	100	0	64	65	0	0	34	0.93
39601--39637	19	1.9	19	94	0	65	29	18	13	37	1.90
39760--39787	2	14.0	2	100	0	56	50	0	0	50	1.00
42114--42153	19	2.0	21	85	9	57	40	17	12	30	1.86
44339--44502	78	2.1	80	88	2	242	42	4	4	48	1.44
54955--55013	29	2.0	29	93	6	102	35	18	23	22	1.96
56590--56666	40	1.9	40	94	0	136	36	12	14	36	1.84
59065--59099	18	1.9	18	88	0	52	28	8	37	25	1.85
63593--63824	48	4.8	48	90	1	367	35	36	16	12	1.86
75204--75228	3	8.3	3	100	0	50	36	0	0	64	0.94
86931--86964	7	4.9	7	92	0	59	38	29	17	14	1.90
87616--87673	30	1.9	30	92	0	98	41	5	3	50	1.42
87798--87855	28	2.1	28	96	0	107	37	22	13	25	1.91
88508--88624	58	2.0	58	98	0	225	23	23	16	36	1.94
89769--89804	4	9.0	4	93	0	63	25	2	0	72	0.98
89938--89992	27	2.0	28	96	3	103	21	25	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97367--97437	25	2.8	25	93	0	115	32	30	19	16	1.95
97366--97446	25	3.2	24	80	13	92	29	28	22	19	1.98
101599--101696	25	3.9	25	93	0	151	30	26	21	21	1.98
106916--106976	27	2.3	27	97	2	115	44	13	13	29	1.81

Tables:   1

The End!