Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009975.1 Corchorus capsularis cultivar CVL-1 contig09996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103588

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11509--11559
24
2.1
24
88
0
75
37
1
29
31
1.69
17005--17046
2
21.5
2
95
4
77
47
0
0
52
1.00
18880--18918
19
2.1
19
90
4
62
20
25
20
33
1.97
29051--29075
1
25.0
1
100
0
50
0
0
0
100
0.00
46603--46639
19
1.9
19
100
0
74
16
27
13
43
1.85
46690--46745
21
2.8
20
78
5
60
32
19
8
39
1.83
50786--50935
73
2.0
75
92
2
250
34
19
20
26
1.96
52195--52232
18
2.1
18
85
9
51
63
13
23
0
1.30
55459--55500
20
2.1
20
100
0
84
50
19
11
19
1.78
62443--62471
2
14.5
2
100
0
58
48
0
0
51
1.00
63320--63389
31
2.2
31
85
7
88
32
24
27
15
1.95
74659--74722
6
11.0
6
80
12
71
45
15
1
37
1.56
74662--74716
28
2.0
28
89
7
85
43
16
1
38
1.58
76779--76807
2
14.5
2
100
0
58
51
0
0
48
1.00
77100--77129
2
15.0
2
100
0
60
50
0
0
50
1.00
78402--78426
12
2.1
12
100
0
50
48
8
8
36
1.62
79485--79521
3
12.7
3
88
5
58
64
2
32
0
1.07
80048--80076
1
29.0
1
100
0
58
0
0
0
100
0.00
83470--83511
4
10.5
4
84
0
57
23
33
0
42
1.55
83473--83511
8
4.9
8
96
0
69
25
33
0
41
1.56
85459--85499
14
3.0
14
89
3
57
68
0
14
17
1.22
87178--87210
2
17.5
2
87
12
52
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91272--91558
93
3.1
93
90
1
450
35
18
25
19
1.95
97776--97804
2
14.5
2
100
0
58
51
0
0
48
1.00
99011--99144
39
3.7
39
76
17
160
25
29
10
34
1.89
99041--99167
30
3.9
30
76
16
119
25
29
10
34
1.89
99011--99175
69
2.4
69
92
0
267
24
29
10
35
1.89
99105--99174
30
2.3
30
97
0
131
24
28
8
38
1.85
101560--101621
28
2.2
29
94
2
108
29
3
19
48
1.64
102464--103464
327
3.0
322
79
9
1030
39
16
12
32
1.85
103455--103482
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!