Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009976.1 Corchorus capsularis cultivar CVL-1 contig09997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19529

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
890--1268
87
4.4
87
75
10
321
37
15
14
32
1.88
890--1409
65
7.9
64
74
11
257
39
14
14
31
1.86
1041--1137
43
2.3
43
80
3
106
37
12
16
34
1.86
882--1276
22
18.2
22
73
9
276
36
14
15
32
1.88
1303--1425
22
5.6
22
85
1
158
39
13
16
30
1.86
1303--1425
43
2.8
44
87
2
185
39
13
16
30
1.86
1289--1424
65
2.1
66
85
1
184
41
13
14
30
1.84
1448--2166
331
2.2
329
81
4
804
37
14
14
33
1.86
8472--8497
12
2.2
12
100
0
52
15
30
7
46
1.74
11121--11153
13
2.5
13
95
0
57
0
3
6
90
0.52
18774--18805
16
2.0
16
93
0
55
62
0
9
28
1.26

Tables:   1

The End!