Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009978.1 Corchorus capsularis cultivar CVL-1 contig09999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56583

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--41
13
2.6
13
90
4
52
31
0
2
65
1.07
1--33
12
2.8
12
90
4
50
30
0
0
69
0.88
171--215
21
2.1
21
88
8
65
35
8
37
17
1.81
8653--8857
31
6.6
30
81
7
203
34
24
21
19
1.96
8653--8857
63
3.3
62
83
1
230
34
24
21
19
1.96
8653--8857
94
2.2
94
81
1
241
34
24
21
19
1.96
12933--12959
14
1.9
14
100
0
54
33
29
29
7
1.85
17308--17346
20
1.9
21
89
5
62
17
0
12
69
1.19
18651--18693
16
2.8
16
85
3
52
53
0
0
46
1.00
19114--19272
68
2.4
67
82
7
173
37
10
6
45
1.63
20830--20882
15
3.5
15
77
10
63
22
28
30
18
1.98
21065--21095
3
10.3
3
92
0
53
0
29
3
67
1.06
21067--21096
15
2.0
15
100
0
60
0
26
6
66
1.16
22998--23023
2
13.0
2
100
0
52
50
0
0
50
1.00
49792--49849
30
1.9
30
85
0
80
17
25
29
27
1.97
54150--54250
37
2.7
37
79
13
116
34
12
16
35
1.87
55801--55859
21
2.8
21
76
19
59
25
16
8
49
1.74
55906--56001
34
2.8
33
78
13
97
14
28
5
52
1.63
55982--56024
19
2.2
20
95
4
79
16
25
9
48
1.75
56021--56072
7
7.6
7
84
4
70
15
25
1
57
1.48
56022--56072
20
2.5
21
80
3
50
15
25
1
56
1.50
56059--56092
16
2.1
17
89
10
54
14
17
5
61
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56055--56320
22
12.5
22
76
14
202
21
19
4
54
1.62
55932--56128
89
2.2
89
86
7
269
15
26
5
52
1.64
56055--56316
106
2.5
105
80
7
282
21
19
4
54
1.62
56124--56288
84
1.9
86
84
7
221
24
18
4
53
1.62
56081--56320
62
3.8
64
78
13
221
22
20
4
53
1.63
56368--56404
15
2.6
14
91
8
65
18
24
5
51
1.67
56393--56544
22
7.1
22
73
8
98
20
19
4
55
1.61
56393--56470
7
10.7
7
74
8
57
19
19
1
60
1.44
56393--56470
15
5.4
14
70
8
57
19
19
1
60
1.44

Tables:   1

The End!