Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009979.1 Corchorus capsularis cultivar CVL-1 contig10000, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29372

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2437--2474
18
2.1
18
85
9
51
0
23
0
76
0.79
3051--3086
14
2.6
13
87
12
54
36
19
8
36
1.82
5873--5931
21
2.8
21
76
19
59
25
16
8
49
1.74
5962--6131
34
5.0
33
77
14
166
16
24
4
54
1.61
6074--6125
7
7.6
7
84
4
70
15
25
1
57
1.48
6075--6125
20
2.5
21
80
3
50
15
25
1
56
1.50
6160--6373
22
10.0
21
76
10
168
23
19
3
54
1.59
6177--6341
84
1.9
86
85
4
228
24
17
3
54
1.57
6108--6360
106
2.4
106
80
6
264
22
19
3
54
1.59
6424--6457
15
2.4
14
90
9
59
20
23
5
50
1.70
6446--6597
22
7.1
22
77
8
143
20
20
3
55
1.59
6446--6523
7
10.7
7
74
8
57
19
19
1
60
1.44
6446--6523
15
5.4
14
70
8
57
19
19
1
60
1.44
8612--8653
22
2.0
21
86
13
59
14
9
4
71
1.28
14281--14544
35
7.8
35
73
13
180
41
9
17
31
1.81
14279--14472
31
5.9
32
74
11
144
39
8
20
31
1.82
14349--14541
31
5.8
31
70
18
131
41
10
16
30
1.83
17906--18790
35
25.7
35
77
10
794
34
17
9
38
1.83
17906--18789
70
12.8
70
81
7
900
34
17
9
38
1.83
17906--18411
143
3.6
143
91
2
763
34
17
9
38
1.82
18381--18434
25
2.2
25
83
6
65
35
14
7
42
1.74
18276--18540
130
2.0
130
88
0
395
33
16
10
39
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18454--18790
135
2.5
135
93
0
584
35
16
10
37
1.84
20742--20793
20
2.5
20
76
14
52
11
13
19
55
1.68
21538--21575
3
12.7
3
100
0
76
31
0
0
68
0.90
22776--22871
34
2.8
35
80
4
115
34
19
22
22
1.97
24531--24565
18
2.0
17
88
5
52
28
5
8
57
1.52
24649--24693
4
10.8
4
95
4
72
22
0
0
77
0.76
28833--29372
35
15.5
35
77
11
515
33
17
9
38
1.83
28833--29282
70
6.3
70
92
3
731
33
17
10
38
1.83
28833--29304
143
3.3
143
94
2
792
33
17
9
38
1.83
29274--29328
25
2.2
25
87
6
76
38
14
7
40
1.74
29169--29363
60
3.1
60
83
10
187
35
16
9
38
1.81

Tables:   1

The End!