Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009980.1 Corchorus capsularis cultivar CVL-1 contig10001, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12630
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:629 original size:3 final size:3

Alignment explanation


    Indices: 621--652  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        611 CTTCCTCGTT

                                                      
        621 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

        653 GTATCTTTTG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTA

Found at i:10973 original size:21 final size:21

Alignment explanation


    Indices: 10949--10997  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

      10939 CAGCTGGGGG

                          * *   *
      10949 CCCATGTGGTATGCTTGGCGC
          1 CCCATGTGGTATGCCTCGCGA

                      *          
      10970 CCCATGTGGTTTGCCTCGCGA
          1 CCCATGTGGTATGCCTCGCGA

                   
      10991 CCCATGT
          1 CCCATGT

      10998 CCTCCAGTGC


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.10, C:0.33, G:0.29, T:0.29


Consensus pattern (21 bp):   
CCCATGTGGTATGCCTCGCGA
Done.