Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009983.1 Corchorus capsularis cultivar CVL-1 contig10004, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56266

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1198--1253
28
2.0
28
82
6
69
16
17
7
58
1.59
2736--2776
17
2.5
17
80
11
50
29
29
4
36
1.78
5447--5484
15
2.6
14
88
8
58
78
0
21
0
0.74
5495--5636
45
3.2
45
89
3
223
36
8
17
37
1.80
5490--5632
44
3.2
44
86
10
209
34
7
19
37
1.81
6164--6195
15
2.1
16
94
5
57
87
0
12
0
0.54
6744--6784
6
6.5
6
83
10
55
82
0
17
0
0.66
6735--6778
20
2.2
20
92
4
72
81
0
15
2
0.78
7068--7165
50
2.0
50
95
0
178
33
19
13
33
1.90
7982--8441
70
6.6
69
90
2
663
28
27
16
27
1.97
8528--8567
20
2.0
20
95
0
71
22
25
30
22
1.99
9015--9091
29
2.8
26
77
12
73
18
15
23
42
1.88
9429--9455
14
1.9
14
100
0
54
22
14
11
51
1.73
9603--9641
20
2.0
20
94
0
69
30
10
17
41
1.83
15418--15648
36
7.3
35
62
31
119
39
12
22
25
1.90
15389--15741
62
5.7
62
89
2
516
39
13
22
25
1.90
19329--19353
6
4.2
6
100
0
50
32
0
32
36
1.58
28070--28170
37
2.7
37
80
13
125
32
15
15
35
1.90
28905--28950
21
2.2
21
84
7
58
50
2
8
39
1.46
33127--33170
16
2.8
16
82
6
54
11
9
6
72
1.27
34245--34293
21
2.3
21
82
6
55
42
14
26
16
1.86
36203--36243
22
1.9
22
90
5
66
26
21
2
48
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43166--43198
16
2.1
16
94
0
57
9
15
6
69
1.34
43169--43223
22
2.5
22
73
8
58
9
9
5
76
1.15
51984--52132
75
2.0
74
90
2
235
43
6
16
33
1.74
52334--52477
71
2.0
73
94
2
256
46
8
16
28
1.76
55859--55899
21
2.0
21
95
0
73
46
14
26
12
1.80
55861--55907
21
2.2
21
84
0
58
51
12
27
8
1.69

Tables:   1

The End!