Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009985.1 Corchorus capsularis cultivar CVL-1 contig10006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71770

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8811--8836
12
2.2
12
100
0
52
50
0
15
34
1.45
10485--10533
25
2.0
25
95
0
89
22
14
12
51
1.75
19031--19057
4
6.8
4
100
0
54
51
0
0
48
1.00
19993--20051
17
3.3
17
68
13
55
33
11
20
33
1.89
19997--20106
37
3.1
34
83
8
98
28
17
19
35
1.94
21546--21647
42
2.4
42
100
0
204
31
21
11
35
1.90
21546--21647
21
4.9
21
76
0
114
31
21
11
35
1.90
27327--27429
33
3.1
33
78
4
109
26
11
19
42
1.85
28012--28051
21
1.9
21
85
10
55
30
25
22
22
1.99
40296--40355
21
2.9
21
76
0
75
31
21
11
35
1.90
41464--41536
30
2.4
30
100
0
146
19
32
17
30
1.95
43631--43691
30
2.0
30
87
12
90
21
29
18
31
1.96
45542--46042
258
1.9
258
93
0
858
22
26
17
33
1.96
54044--54089
22
2.1
22
91
0
74
13
23
15
47
1.80
54977--55018
6
7.2
6
84
10
52
69
0
30
0
0.89
54966--55024
30
2.0
30
87
12
86
66
0
33
0
0.92
54972--55024
13
3.7
14
77
22
65
66
0
33
0
0.92
56773--56827
21
2.6
22
83
13
71
21
45
16
16
1.85
59720--59747
8
3.5
8
100
0
56
89
0
0
10
0.49
62316--62380
31
2.1
31
100
0
130
38
15
16
29
1.90
67154--67207
21
2.5
21
96
3
99
16
48
20
14
1.81

Tables:   1

The End!