Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009987.1 Corchorus capsularis cultivar CVL-1 contig10008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20165

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4952--4986
2
17.0
2
94
5
61
48
2
0
48
1.16
4972--5057
43
2.0
43
97
0
163
33
13
5
46
1.68
5168--5211
11
4.0
11
90
0
61
50
6
2
40
1.42
5164--5210
22
2.1
22
92
0
76
48
6
2
42
1.40
6392--6470
16
5.0
16
78
9
90
8
16
35
39
1.80
6385--6470
31
2.7
32
78
5
95
8
17
34
39
1.79
6712--6791
41
2.0
41
92
0
133
38
3
20
37
1.70
7327--7418
32
2.9
32
83
3
114
8
17
35
38
1.81
7317--7402
16
5.4
16
74
10
68
10
17
34
37
1.84
8329--8380
16
3.2
16
68
10
52
19
7
32
40
1.80
8315--8428
32
3.6
32
84
0
138
19
10
33
36
1.86
8569--8607
20
2.0
20
89
0
60
38
5
2
53
1.37
8611--8651
10
3.9
10
81
12
55
4
9
29
56
1.53
11766--11799
11
3.2
10
84
15
50
29
2
17
50
1.61
13555--13628
37
2.1
34
82
7
85
33
9
4
52
1.53
19290--20038
375
2.0
374
97
0
1399
26
25
15
32
1.96

Tables:   1

The End!