Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009988.1 Corchorus capsularis cultivar CVL-1 contig10009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21643

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6345--6381
19
2.0
18
89
5
56
40
13
21
24
1.89
9956--10005
15
3.1
16
80
13
50
78
6
6
10
1.10
9970--10005
14
2.5
14
90
4
54
86
2
2
8
0.77
14448--14481
17
2.0
17
88
0
50
20
2
61
14
1.46
15090--15131
15
2.7
15
92
3
66
11
76
0
11
1.03
20032--20430
22
18.5
22
69
19
170
19
20
6
54
1.64
20114--20169
15
3.9
15
74
9
62
16
21
5
57
1.59
20032--20244
116
1.8
113
81
8
259
17
18
7
56
1.64
20147--20432
43
6.8
43
72
14
174
19
20
6
53
1.66
20291--20430
64
2.2
64
83
7
169
22
18
5
53
1.64
20145--20426
143
2.0
143
80
6
320
19
20
5
54
1.64
20615--20734
63
1.9
62
90
8
190
25
16
5
51
1.67
21379--21643
102
2.6
102
86
3
293
37
16
5
40
1.72
21430--21617
51
3.7
48
78
9
205
37
16
4
42
1.68
21429--21643
102
2.1
101
91
0
340
36
17
4
41
1.70
21418--21641
51
4.4
50
75
5
200
37
16
5
40
1.73

Tables:   1

The End!