Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009991.1 Corchorus capsularis cultivar CVL-1 contig10012, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14960
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31


Found at i:3353 original size:19 final size:18

Alignment explanation


    Indices: 3322--3357  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       3312 TTGAAATAAT

                              
       3322 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
       3340 TCTTCCAATTATCTTCAA
          1 TCTT-CAATGATCTTCAA

       3358 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    4  0.25
  19   12  0.75

ACGTcount: A:0.31, C:0.25, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA

Found at i:3559 original size:20 final size:21

Alignment explanation


    Indices: 3521--3559  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       3511 TAGAAAATAA

                          *      
       3521 GGTAAAAATGCATATAAAAGT
          1 GGTAAAAATGCATAGAAAAGT

                      *        
       3542 GGTAAAAA-GTATAGAAAA
          1 GGTAAAAATGCATAGAAAA

       3560 ATAGCCATAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    8  0.50
  21    8  0.50

ACGTcount: A:0.56, C:0.03, G:0.21, T:0.21


Consensus pattern (21 bp):   
GGTAAAAATGCATAGAAAAGT
Done.