Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009998.1 Corchorus capsularis cultivar CVL-1 contig10019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67584

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9072--9115
3
14.7
3
100
0
88
65
0
0
34
0.93
16564--16606
23
2.0
22
86
9
61
16
4
18
60
1.52
26250--26312
30
2.1
30
100
0
126
42
6
12
38
1.68
27942--28014
38
2.0
37
86
5
103
34
9
6
49
1.62
39476--39616
73
1.9
74
91
4
232
38
12
12
37
1.80
41018--41057
20
2.1
19
90
4
62
45
0
2
52
1.14
52737--52884
22
6.8
22
65
13
72
33
12
10
43
1.77
52985--53039
21
2.6
21
85
8
67
40
10
7
41
1.68
53000--53212
22
9.5
21
68
20
96
36
15
7
40
1.76
53141--53233
22
4.2
22
76
10
73
40
18
7
33
1.78
53304--53383
24
3.6
21
74
14
63
38
18
8
33
1.82
53350--53694
22
16.0
22
72
15
152
37
17
11
32
1.86
53350--53691
44
7.9
44
70
17
186
38
17
11
33
1.86
53283--53704
214
2.0
214
99
0
826
39
17
11
31
1.85
53511--53596
21
3.9
22
76
11
68
39
20
8
31
1.82
53961--54024
31
2.1
31
88
5
96
48
3
20
28
1.64
55533--55563
15
2.1
15
93
0
53
29
0
29
41
1.56

Tables:   1

The End!