Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010004.1 Corchorus olitorius cultivar O-4 contig10036, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1423
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37


Found at i:611 original size:22 final size:22

Alignment explanation


    Indices: 586--628  Score: 77
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        576 TTGAGAGATC

                *                 
        586 AAAATTGAATTAAATTATTTAA
          1 AAAAATGAATTAAATTATTTAA

                                 
        608 AAAAATGAATTAAATTATTTA
          1 AAAAATGAATTAAATTATTTA

        629 TAATTTACCC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40


Consensus pattern (22 bp):   
AAAAATGAATTAAATTATTTAA
Done.