Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010008.1 Corchorus olitorius cultivar O-4 contig10040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13884

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21--63
15
2.9
15
83
10
52
53
0
2
44
1.13
23--64
9
4.7
9
77
11
50
54
0
2
42
1.13
27--77
24
2.1
24
85
0
66
49
0
5
45
1.26
349--416
2
33.5
2
76
14
50
42
2
2
51
1.32
349--416
16
4.2
16
77
9
66
42
2
2
51
1.32
369--420
14
3.9
14
73
16
56
42
5
0
51
1.25
826--1011
22
8.4
22
67
17
75
39
11
13
35
1.81
1080--1236
22
7.1
22
74
7
104
33
10
19
36
1.85
1975--2218
22
11.0
21
75
11
143
37
6
16
38
1.76
2141--2240
44
2.3
43
82
6
112
43
9
14
34
1.76
4162--4190
2
15.0
2
92
7
51
48
0
0
51
1.00
4587--5194
22
27.4
22
71
11
307
37
9
16
35
1.82
5136--5215
22
3.6
22
86
1
97
33
11
16
38
1.84
5996--6032
2
18.5
2
100
0
74
51
0
0
48
1.00
12656--12990
176
1.9
176
91
0
544
35
15
13
35
1.87

Tables:   1

The End!