Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010013.1 Corchorus olitorius cultivar O-4 contig10045, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2706
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36


Found at i:1428 original size:25 final size:25

Alignment explanation


    Indices: 1382--1435  Score: 67
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       1372 ACCGTTGAGG

                                  *  
       1382 AAATTGTTTTTATTACTGTTTTGTT
          1 AAATTGTTTTTATTACTGTTTTATT

                                       
       1407 AAATTGTTTTTAAATTA-T-TTTTATT
          1 AAATTGTTTTT--ATTACTGTTTTATT

                
       1432 AAAT
          1 AAAT

       1436 GATTTTGGGT


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  25   21  0.81
  26    1  0.04
  27    4  0.15

ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61


Consensus pattern (25 bp):   
AAATTGTTTTTATTACTGTTTTATT
Done.