Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010014.1 Corchorus olitorius cultivar O-4 contig10046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2111
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33


Found at i:1587 original size:22 final size:22

Alignment explanation


    Indices: 1538--1588  Score: 59
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       1528 AAATATCACC

                         *   **   
       1538 ATAATTATTTTTGGCAGCCATA
          1 ATAATTATTTTTGCCAGAAATA

                                   
       1560 ATAATTATTTTTGCCAAGAAATA
          1 ATAATTATTTTTGCC-AGAAATA

                   
       1583 A-AATTA
          1 ATAATTA

       1589 GGCAATAATT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  22   19  0.76
  23    6  0.24

ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39


Consensus pattern (22 bp):   
ATAATTATTTTTGCCAGAAATA
Done.