Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010015.1 Corchorus olitorius cultivar O-4 contig10047, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4706
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35


Found at i:4689 original size:5 final size:5

Alignment explanation


    Indices: 4679--4703  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       4669 TCTCAGGAAA

                                         
       4679 AAAAG AAAAG AAAAG AAAAG AAAAG
          1 AAAAG AAAAG AAAAG AAAAG AAAAG

       4704 TTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00


Consensus pattern (5 bp):   
AAAAG

Done.