Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010017.1 Corchorus olitorius cultivar O-4 contig10049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5939
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:2642 original size:13 final size:13

Alignment explanation


    Indices: 2616--2651  Score: 54
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       2606 AAAAGCTTGA

                          
       2616 TTTTGAAGAAGTGC
          1 TTTTGAA-AAGTGC

                         
       2630 TTTTGAAAAGTGC
          1 TTTTGAAAAGTGC

                *    
       2643 TTTTCAAAA
          1 TTTTGAAAA

       2652 TTGAGGTTGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  13   14  0.67
  14    7  0.33

ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39


Consensus pattern (13 bp):   
TTTTGAAAAGTGC

Found at i:3345 original size:16 final size:17

Alignment explanation


    Indices: 3326--3359  Score: 52
    Period size: 18  Copynumber: 2.0  Consensus size: 17

       3316 TATAAATATT

                             
       3326 TAAATT-GAAATAAATA
          1 TAAATTAGAAATAAATA

                              
       3342 TAAATTAAGAAATAAATA
          1 TAAATT-AGAAATAAATA

       3360 AATACAAAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    6  0.38
  18   10  0.62

ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29


Consensus pattern (17 bp):   
TAAATTAGAAATAAATA
Done.