Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010019.1 Corchorus olitorius cultivar O-4 contig10051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 997

Length: 1663
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28


Found at i:711 original size:6 final size:6

Alignment explanation


    Indices: 697--763  Score: 89
    Period size: 6  Copynumber: 10.7  Consensus size: 6

        687 AAAATTAACA

                                             *                       
        697 AAAACAC AAAAAC AAAAAC AAAAAC AAAAGC AAAAAC AAAAAC AAAATAC
          1 AAAA-AC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAA-AC

                  *            
        747 GAAAAAT AAAAAC AAAA
          1 -AAAAAC AAAAAC AAAA

        764 CTAAAGGAAA


Statistics
Matches: 54,  Mismatches: 4, Indels: 5
        0.86            0.06        0.08

Matches are distributed among these distances:
   6   43  0.80
   7    7  0.13
   8    4  0.07

ACGTcount: A:0.79, C:0.15, G:0.03, T:0.03


Consensus pattern (6 bp):   
AAAAAC

Done.