Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001002.1 Corchorus olitorius cultivar O-4 contig01002, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1151
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.35


Found at i:304 original size:25 final size:24

Alignment explanation


    Indices: 268--314  Score: 60
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        258 TCCTTCTATT

                          *         
        268 CATCTATCATC-AAGTTTTTCATC
          1 CATCTATCATCAAAATTTTTCATC

                                    
        291 CATCTCATCCATCAAAATTTTTCA
          1 CATCT-AT-CATCAAAATTTTTCA

        315 AATTTTCTAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  23    5  0.25
  24    2  0.10
  25    4  0.20
  26    9  0.45

ACGTcount: A:0.30, C:0.28, G:0.02, T:0.40


Consensus pattern (24 bp):   
CATCTATCATCAAAATTTTTCATC
Done.