Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010022.1 Corchorus olitorius cultivar O-4 contig10054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6939

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--29
2
13.0
2
100
0
52
50
0
0
50
1.00
3392--3538
2
73.0
2
73
20
103
46
4
3
45
1.41
3974--4027
21
2.6
21
75
0
54
44
7
11
37
1.68
4167--4234
30
2.2
30
84
2
82
33
25
17
23
1.96
5284--5331
25
2.0
24
91
4
78
37
8
25
29
1.85
5287--5332
12
3.8
12
79
2
56
36
10
23
28
1.89
6321--6356
10
3.6
10
84
0
54
27
13
22
36
1.92
6685--6722
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!