Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010023.1 Corchorus olitorius cultivar O-4 contig10055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16718

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8270--8319
25
2.0
25
88
0
73
52
10
14
24
1.71
8264--8317
25
2.2
25
83
6
65
53
12
11
22
1.70
14005--14030
13
2.0
13
100
0
52
53
23
7
15
1.67
14841--14903
5
13.2
5
78
9
53
80
12
3
3
0.94
14839--14883
19
2.3
20
92
3
74
84
11
2
2
0.80
14845--14900
28
2.0
29
86
10
80
80
12
3
3
0.97
14834--14901
20
3.5
18
78
13
55
82
11
2
2
0.89
15818--15924
16
6.7
16
73
7
83
10
14
34
40
1.81
15818--15924
32
3.3
32
76
5
117
10
14
34
40
1.81
15914--15979
6
11.5
6
72
15
50
4
21
45
28
1.71
15914--15962
23
2.1
23
88
7
73
4
20
44
30
1.70
15938--15986
17
2.9
17
100
0
98
6
24
44
24
1.76
16120--16153
5
7.2
5
87
12
54
61
0
0
38
0.96
16115--16153
13
3.1
13
89
10
55
61
0
0
38
0.96
16425--16496
31
2.3
31
75
17
78
61
8
4
26
1.43

Tables:   1

The End!