Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010031.1 Corchorus olitorius cultivar O-4 contig10063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2356
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:1330 original size:16 final size:16

Alignment explanation


    Indices: 1308--1346  Score: 53
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       1298 GAAAAGCAAT

                             
       1308 TAAACTAAAGATAAATC
          1 TAAACTAAA-ATAAATC

                     *      
       1325 -AAACTAAATTAAATC
          1 TAAACTAAAATAAATC

                   
       1340 TAAACTA
          1 TAAACTA

       1347 TGGCAATTAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  15    6  0.30
  16   14  0.70

ACGTcount: A:0.59, C:0.13, G:0.03, T:0.26


Consensus pattern (16 bp):   
TAAACTAAAATAAATC
Done.