Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010038.1 Corchorus olitorius cultivar O-4 contig10070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5271
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29


Found at i:4774 original size:2 final size:2

Alignment explanation


    Indices: 4767--4804  Score: 58
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       4757 TATTCATGTG

                           **                                       
       4767 TA TA TA TA TA GC TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       4805 AACCAACTTT


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47


Consensus pattern (2 bp):   
TA

Found at i:5037 original size:3 final size:3

Alignment explanation


    Indices: 5031--5084  Score: 63
    Period size: 3  Copynumber: 17.7  Consensus size: 3

       5021 ATAATATCAC

                                *   *        *     *                    
       5031 AAT AAT AAT AAT AAT GAT GAT AAAT GAT AAA AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT

                      
       5077 AAT AAT AA
          1 AAT AAT AA

       5085 ACAAAACCCT


Statistics
Matches: 44,  Mismatches: 6, Indels: 2
        0.85            0.12        0.04

Matches are distributed among these distances:
   3   42  0.95
   4    2  0.05

ACGTcount: A:0.65, C:0.00, G:0.06, T:0.30


Consensus pattern (3 bp):   
AAT

Done.