Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010039.1 Corchorus olitorius cultivar O-4 contig10071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16314
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--26  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

                                                  
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

         27 ACAATTTGAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:909 original size:31 final size:32

Alignment explanation


    Indices: 853--912  Score: 95
    Period size: 31  Copynumber: 1.9  Consensus size: 32

        843 CAAAAAGAGA

                        *    *              
        853 ATTTAGATAACCGAGGGGGCATTTATTTTGGT
          1 ATTTAGATAACCAAGGGAGCATTTATTTTGGT

                                         
        885 ATTTAGATAA-CAAGGGAGCATTTATTTT
          1 ATTTAGATAACCAAGGGAGCATTTATTTT

        913 CTCTTTCAAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  31   16  0.62
  32   10  0.38

ACGTcount: A:0.30, C:0.08, G:0.23, T:0.38


Consensus pattern (32 bp):   
ATTTAGATAACCAAGGGAGCATTTATTTTGGT
Done.