Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001004.1 Corchorus olitorius cultivar O-4 contig01004, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 883

Length: 1472
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30


Found at i:1430 original size:45 final size:45

Alignment explanation


    Indices: 1313--1460  Score: 224
    Period size: 45  Copynumber: 3.2  Consensus size: 45

       1303 CCATTATTGG

                      *           * *                     
       1313 CTCTAACTCCCTCAAACCCATCAAGATTTTCCACCCTCATTCTCCT
          1 CTCTAACTCCATCAAACCCATCCACATTTT-CACCCTCATTCTCCT

                       *                      *            
       1359 CCTCTAACTTCTATCAAACCCATCCACATTTTCATCCTCATTCTCCT
          1 -CTCTAAC-TCCATCAAACCCATCCACATTTTCACCCTCATTCTCCT

                                                         
       1406 CTCTAACTCCATCAAACCCATCCACATTTTCACCCTCATTCTCCT
          1 CTCTAACTCCATCAAACCCATCCACATTTTCACCCTCATTCTCCT

                      
       1451 CTCTAACTCC
          1 CTCTAACTCC

       1461 TTGTTCCCCA


Statistics
Matches: 93,  Mismatches: 7, Indels: 4
        0.89            0.07        0.04

Matches are distributed among these distances:
  45   46  0.49
  46    7  0.08
  47   21  0.23
  48   19  0.20

ACGTcount: A:0.24, C:0.43, G:0.01, T:0.32


Consensus pattern (45 bp):   
CTCTAACTCCATCAAACCCATCCACATTTTCACCCTCATTCTCCT

Done.