Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010040.1 Corchorus olitorius cultivar O-4 contig10072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8866
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:1414 original size:6 final size:6

Alignment explanation


    Indices: 1403--1432  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1393 ACTTCCGATT

                                              
       1403 GATTTC GATTTC GATTTC GATTTC GATTTC
          1 GATTTC GATTTC GATTTC GATTTC GATTTC

       1433 AATTAATAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50


Consensus pattern (6 bp):   
GATTTC

Found at i:8444 original size:38 final size:39

Alignment explanation


    Indices: 8395--8469  Score: 143
    Period size: 38  Copynumber: 1.9  Consensus size: 39

       8385 TAAGTAAACG

                                                   
       8395 AGAATGAAATTGGAGAAAAGATCAATTAGAAAAAAAAGA
          1 AGAATGAAATTGGAGAAAAGATCAATTAGAAAAAAAAGA

                                                 
       8434 AGAA-GAAATTGGAGAAAAGATCAATTAGAAAAAAAA
          1 AGAATGAAATTGGAGAAAAGATCAATTAGAAAAAAAA

       8470 ATATTGGAGA


Statistics
Matches: 36,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  38   32  0.89
  39    4  0.11

ACGTcount: A:0.63, C:0.03, G:0.20, T:0.15


Consensus pattern (39 bp):   
AGAATGAAATTGGAGAAAAGATCAATTAGAAAAAAAAGA
Done.