Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010041.1 Corchorus olitorius cultivar O-4 contig10073, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 858

Length: 1431
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:572 original size:20 final size:20

Alignment explanation


    Indices: 526--575  Score: 64
    Period size: 20  Copynumber: 2.5  Consensus size: 20

        516 TGATAAATTA

                          * *   
        526 CAATAATATTAAGGGTTTTT
          1 CAATAATATTAAGGATATTT

            * *                 
        546 TATTAATATTAAGGATATTT
          1 CAATAATATTAAGGATATTT

                      
        566 CAATAATATT
          1 CAATAATATT

        576 TAGTTCGTAT


Statistics
Matches: 24,  Mismatches: 6, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  20   24  1.00

ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46


Consensus pattern (20 bp):   
CAATAATATTAAGGATATTT
Done.