Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010043.1 Corchorus olitorius cultivar O-4 contig10075, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21290
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:6323 original size:15 final size:15

Alignment explanation


    Indices: 6303--6338  Score: 72
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       6293 AGCTAATGAT

                           
       6303 TTTTGCCAGCTGAGA
          1 TTTTGCCAGCTGAGA

                           
       6318 TTTTGCCAGCTGAGA
          1 TTTTGCCAGCTGAGA

                  
       6333 TTTTGC
          1 TTTTGC

       6339 AGGTTATTAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39


Consensus pattern (15 bp):   
TTTTGCCAGCTGAGA
Done.