Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010053.1 Corchorus olitorius cultivar O-4 contig10085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1157
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:1120 original size:2 final size:2

Alignment explanation


    Indices: 1113--1157  Score: 90
    Period size: 2  Copynumber: 22.5  Consensus size: 2

       1103 TCTAAAAAGT

                                                                          
       1113 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

                
       1155 CA C
          1 CA C


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00


Consensus pattern (2 bp):   
CA

Done.