Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010054.1 Corchorus olitorius cultivar O-4 contig10086, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7170
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32


Found at i:302 original size:32 final size:30

Alignment explanation


    Indices: 238--302  Score: 121
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        228 ACCTACTCAC

                                          
        238 ATATATCATAAGAACCGAGAAAAAAAAACT
          1 ATATATCATAAGAACCGAGAAAAAAAAACT

                                          
        268 ATATATCATAAGAACCGAGAAAAAAAAACT
          1 ATATATCATAAGAACCGAGAAAAAAAAACT

            *    
        298 CTATA
          1 ATATA

        303 ACTAAAATAT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   34  1.00

ACGTcount: A:0.58, C:0.14, G:0.09, T:0.18


Consensus pattern (30 bp):   
ATATATCATAAGAACCGAGAAAAAAAAACT

Found at i:6347 original size:2 final size:2

Alignment explanation


    Indices: 6342--6383  Score: 61
    Period size: 2  Copynumber: 22.0  Consensus size: 2

       6332 TTTGGTCGAT

                                     *                                    
       6342 TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA T- TA T- TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

              
       6382 TA
          1 TA

       6384 ATAATAATAT


Statistics
Matches: 36,  Mismatches: 2, Indels: 4
        0.86            0.05        0.10

Matches are distributed among these distances:
   1    2  0.06
   2   34  0.94

ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52


Consensus pattern (2 bp):   
TA

Done.