Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010057.1 Corchorus olitorius cultivar O-4 contig10089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2871
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35


Found at i:2816 original size:154 final size:154

Alignment explanation


    Indices: 2531--2871  Score: 477
    Period size: 154  Copynumber: 2.2  Consensus size: 154

       2521 ATCAATAGTG

                  *     *      *                 *                   * *   * 
       2531 CTTTTCATTCCAATGTTTACGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
          1 CTTTTCGTTCCATTGTTTATGGCCTAACTATAATCATGTTGGTGAGATTAGTCCACTATAAAGGT

                                            *       *                        
       2596 TTTAGCTAATTTGGAACACTTGTTATTTGGGGTCTATCGGGGCCCATTAGTTCCGTTTTGAATCG
         66 TTTAGCTAATTTGGAACACTTGTTATTTGGGGCCTATCGGCGCCCATTAGTTCCGTTTTGAATCG

                                    
       2661 TCATCGATTTGGCAACCCTCAATC
        131 TCATCGATTTGGCAACCCTCAATC

                  *  *                                                       
       2685 CTTTTCTTTTCATTGTTTATGGCCTAACTATAATCATGTTGGTGAGATTAGTCCACTATAAAGGT
          1 CTTTTCGTTCCATTGTTTATGGCCTAACTATAATCATGTTGGTGAGATTAGTCCACTATAAAGGT

                        * *             *              **                *   
       2750 TTTAGCTAATTTTGTACACTTGTTATTTTGGGCCTATCGGCGCTTATTAGTTCCGTTTTGAGTCG
         66 TTTAGCTAATTTGGAACACTTGTTATTTGGGGCCTATCGGCGCCCATTAGTTCCGTTTTGAATCG

              * *           *      *
       2815 TCTTTGATTTGGCAACTCTCAATG
        131 TCATCGATTTGGCAACCCTCAATC

                                     *        
       2839 CTTTTCGTTCCATTGTTTATGGCCTCA-TATAAT
          1 CTTTTCGTTCCATTGTTTATGGCCTAACTATAAT


Statistics
Matches: 164,  Mismatches: 23, Indels: 1
        0.87            0.12        0.01

Matches are distributed among these distances:
 153    6  0.04
 154  158  0.96

ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42


Consensus pattern (154 bp):   
CTTTTCGTTCCATTGTTTATGGCCTAACTATAATCATGTTGGTGAGATTAGTCCACTATAAAGGT
TTTAGCTAATTTGGAACACTTGTTATTTGGGGCCTATCGGCGCCCATTAGTTCCGTTTTGAATCG
TCATCGATTTGGCAACCCTCAATC
Done.