Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010060.1 Corchorus olitorius cultivar O-4 contig10092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11157

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
369--427
16
3.7
16
84
6
75
5
37
1
55
1.32
1641--1677
2
18.5
2
100
0
74
51
0
0
48
1.00
3053--3078
12
2.2
12
100
0
52
23
23
15
38
1.92
3099--3136
2
19.0
2
100
0
76
50
50
0
0
1.00
3384--3758
185
2.0
188
92
2
623
24
21
24
29
1.99
3958--3988
15
2.1
15
100
0
62
22
19
32
25
1.97
5661--5690
15
2.0
15
100
0
60
20
33
0
46
1.51
6298--7284
434
2.3
429
84
4
1254
29
13
13
42
1.83
9812--9979
85
2.0
87
90
2
268
34
5
9
50
1.60
10390--10415
2
13.0
2
100
0
52
50
0
0
50
1.00
10486--10626
72
2.0
72
95
0
255
41
10
17
31
1.83

Tables:   1

The End!