Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010061.1 Corchorus olitorius cultivar O-4 contig10093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3094
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2833 original size:77 final size:78

Alignment explanation


    Indices: 2697--2849  Score: 247
    Period size: 77  Copynumber: 2.0  Consensus size: 78

       2687 TAGTATAGAT

                     *                                  *                    
       2697 AATCTCGTTTGAGCCGGGTTGACCCACTATGGGGGTAAAGCTCTTCCAACAATGGTTTTCTCATT
          1 AATCTCGTTCGAGCCGGGTTGACCCACTATGGGGGTAAAGCTCTCCCAACAATGGTTTTCTCATT

                         
       2762 TCACAAGACTCAA
         66 TCACAAGACTCAA

                 *                                *                          
       2775 AATCTTGTTCGAGCCGGGTTCG-CCCACTAT-GGGGTAGAGCTCTCCCAACAATGGTTTTCTCAT
          1 AATCTCGTTCGAGCCGGGTT-GACCCACTATGGGGGTAAAGCTCTCCCAACAATGGTTTTCTCAT

                        
       2838 TTCACAAGACTC
         65 TTCACAAGACTC

       2850 GAACTCGAGA


Statistics
Matches: 70,  Mismatches: 4, Indels: 3
        0.91            0.05        0.04

Matches are distributed among these distances:
  77   43  0.61
  78   26  0.37
  79    1  0.01

ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29


Consensus pattern (78 bp):   
AATCTCGTTCGAGCCGGGTTGACCCACTATGGGGGTAAAGCTCTCCCAACAATGGTTTTCTCATT
TCACAAGACTCAA
Done.