Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010064.1 Corchorus olitorius cultivar O-4 contig10096, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2171
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.33


Found at i:1908 original size:101 final size:102

Alignment explanation


    Indices: 1731--1937  Score: 398
    Period size: 101  Copynumber: 2.0  Consensus size: 102

       1721 CTTTCTCATA

                                                                             
       1731 TTTGAATTTAAATCTAAAAGATATATATATATATATATATTATATAAAAGAAAATGAAAGCAAAA
          1 TTTGAATTTAAATCTAAAAGA-ATATATATATATATATATTATATAAAAGAAAATGAAAGCAAAA

                                                  
       1796 TGAAATTGGAAAATATGGTGGAAATGAGAAATATTTAC
         65 TGAAATTGGAAAATATGGTGGAAATGAGAAATATTTAC

                                                                             
       1834 TTTGAATTTAAATCTAAAAG-ATATATATATATATATATTATATAAAAGAAAATGAAAGCAAAAT
          1 TTTGAATTTAAATCTAAAAGAATATATATATATATATATTATATAAAAGAAAATGAAAGCAAAAT

                                                 
       1898 GAAATTGGAAAATATGGTGGAAATGAGAAATATTTAC
         66 GAAATTGGAAAATATGGTGGAAATGAGAAATATTTAC

               
       1935 TTT
          1 TTT

       1938 TTTTGGTGTA


Statistics
Matches: 104,  Mismatches: 0, Indels: 2
        0.98            0.00        0.02

Matches are distributed among these distances:
 101   84  0.81
 103   20  0.19

ACGTcount: A:0.51, C:0.03, G:0.14, T:0.33


Consensus pattern (102 bp):   
TTTGAATTTAAATCTAAAAGAATATATATATATATATATTATATAAAAGAAAATGAAAGCAAAAT
GAAATTGGAAAATATGGTGGAAATGAGAAATATTTAC

Done.