Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010067.1 Corchorus olitorius cultivar O-4 contig10099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1835
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30


Found at i:1410 original size:22 final size:23

Alignment explanation


    Indices: 1380--1422  Score: 79
    Period size: 22  Copynumber: 1.9  Consensus size: 23

       1370 TTTAAGCTTC

                                   
       1380 GGGTCACCCGGGGCTGGGTAGGG
          1 GGGTCACCCGGGGCTGGGTAGGG

                                 
       1403 GGGT-ACCCGGGGCTGGGTAG
          1 GGGTCACCCGGGGCTGGGTAG

       1423 CCTCAGATTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  22   16  0.80
  23    4  0.20

ACGTcount: A:0.09, C:0.21, G:0.56, T:0.14


Consensus pattern (23 bp):   
GGGTCACCCGGGGCTGGGTAGGG
Done.