Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010078.1 Corchorus olitorius cultivar O-4 contig10110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1618
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36


Found at i:84 original size:17 final size:17

Alignment explanation


    Indices: 64--97  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

         54 AAGATGAAAG

                 *    *      
         64 AATTATTAAACAATAAA
          1 AATTACTAAAAAATAAA

                             
         81 AATTACTAAAAAATAAA
          1 AATTACTAAAAAATAAA

         98 GGGCGCTTCT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26


Consensus pattern (17 bp):   
AATTACTAAAAAATAAA

Found at i:1518 original size:16 final size:17

Alignment explanation


    Indices: 1492--1523  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       1482 ATGTCAGCTT

                             
       1492 TTTTATTAAAAAAATAA
          1 TTTTATTAAAAAAATAA

                            
       1509 TTTT-TTAAAAAAATA
          1 TTTTATTAAAAAAATA

       1524 TGTGTTTTCG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (17 bp):   
TTTTATTAAAAAAATAA
Done.