Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010081.1 Corchorus olitorius cultivar O-4 contig10113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1956
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37


Found at i:1305 original size:2 final size:2

Alignment explanation


    Indices: 1298--1326  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       1288 TTGTTTTAAC

                                                       
       1298 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1327 TCAACTTCTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.