Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010083.1 Corchorus olitorius cultivar O-4 contig10115, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2451
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32


Found at i:1559 original size:16 final size:15

Alignment explanation


    Indices: 1538--1592  Score: 78
    Period size: 16  Copynumber: 3.7  Consensus size: 15

       1528 ATCAAAGTTT

                           
       1538 TTTTTTTTTTTTAGC
          1 TTTTTTTTTTTTAGC

                            
       1553 ATTTTTTTTTTTTAGC
          1 -TTTTTTTTTTTTAGC

                            
       1569 --TTTTTTTTTTACGC
          1 TTTTTTTTTTTTA-GC

                      
       1583 TTTTTTTTTT
          1 TTTTTTTTTT

       1593 CTTACATATA


Statistics
Matches: 36,  Mismatches: 0, Indels: 6
        0.86            0.00        0.14

Matches are distributed among these distances:
  13   11  0.31
  14    2  0.06
  16   23  0.64

ACGTcount: A:0.07, C:0.07, G:0.05, T:0.80


Consensus pattern (15 bp):   
TTTTTTTTTTTTAGC
Done.