Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010087.1 Corchorus olitorius cultivar O-4 contig10119, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1523
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39


Found at i:239 original size:2 final size:2

Alignment explanation


    Indices: 224--275  Score: 59
    Period size: 2  Copynumber: 26.0  Consensus size: 2

        214 CATTAGTATC

                      *  *                   *        *         *         
        224 AT AT AT AC AC AT AT AT AT AT AT GT AT AT GT AT AT AC AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                          
        266 AT AT AT AT AT
          1 AT AT AT AT AT

        276 GTTTAATTGC


Statistics
Matches: 42,  Mismatches: 8, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44


Consensus pattern (2 bp):   
AT

Done.