Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001009.1 Corchorus olitorius cultivar O-4 contig01009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.34


Found at i:488 original size:8 final size:8

Alignment explanation


    Indices: 473--513  Score: 55
    Period size: 8  Copynumber: 4.9  Consensus size: 8

        463 GCTGAGTCTT

                    
        473 TATCTTAC
          1 TATCTTAC

             *      
        481 TGTCTTAC
          1 TATCTTAC

                    
        489 TATCTTAC
          1 TATCTTAC

                     
        497 TATCTTATC
          1 TATCTTA-C

                    
        506 TTATCTTA
          1 -TATCTTA

        514 TTTTATCTTA


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   8   21  0.72
   9    1  0.03
  10    7  0.24

ACGTcount: A:0.22, C:0.22, G:0.02, T:0.54


Consensus pattern (8 bp):   
TATCTTAC

Found at i:494 original size:16 final size:18

Alignment explanation


    Indices: 472--513  Score: 61
    Period size: 16  Copynumber: 2.4  Consensus size: 18

        462 GGCTGAGTCT

                      *       
        472 TTATCTTACTGTCTTA-C
          1 TTATCTTACTATCTTATC

                              
        489 -TATCTTACTATCTTATC
          1 TTATCTTACTATCTTATC

                    
        506 TTATCTTA
          1 TTATCTTA

        514 TTTTATCTTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  16   14  0.64
  17    1  0.05
  18    7  0.32

ACGTcount: A:0.21, C:0.21, G:0.02, T:0.55


Consensus pattern (18 bp):   
TTATCTTACTATCTTATC
Done.