Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010091.1 Corchorus olitorius cultivar O-4 contig10123, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33


Found at i:1289 original size:37 final size:37

Alignment explanation


    Indices: 1245--1315  Score: 124
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       1235 CTTGATCAAC

                        *  *                     
       1245 ATACATGTCTTTTCATATAGACATAACTTTATGATCA
          1 ATACATGTCTTTCCAAATAGACATAACTTTATGATCA

                                              
       1282 ATACATGTCTTTCCAAATAGACATAACTTTATGA
          1 ATACATGTCTTTCCAAATAGACATAACTTTATGA

       1316 ATAATTATGT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  37   32  1.00

ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38


Consensus pattern (37 bp):   
ATACATGTCTTTCCAAATAGACATAACTTTATGATCA
Done.