Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010093.1 Corchorus olitorius cultivar O-4 contig10125, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8242
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:6202 original size:13 final size:13

Alignment explanation


    Indices: 6184--6213  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       6174 TTGGTTTGAA

                        *
       6184 AAAAGTGCTTTTT
          1 AAAAGTGCTTTTG

                         
       6197 AAAAGTGCTTTTG
          1 AAAAGTGCTTTTG

                
       6210 AAAA
          1 AAAA

       6214 TAACCGTAGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.40, C:0.07, G:0.17, T:0.37


Consensus pattern (13 bp):   
AAAAGTGCTTTTG
Done.